Variant report

Variant	rs9820519
Chromosome Location	chr3:179709767-179709768
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13323019	0.86[AFR][1000 genomes]
rs28575206	0.95[AFR][1000 genomes]
rs9631493	0.86[AFR][1000 genomes]
rs9816662	0.86[AFR][1000 genomes]
rs9833792	0.98[AFR][1000 genomes]
rs9849008	0.95[AFR][1000 genomes]
rs9851258	0.84[AFR][1000 genomes]
rs9855039	0.82[AFR][1000 genomes]
rs9855406	0.95[AFR][1000 genomes]
rs9855668	0.93[AFR][1000 genomes]
rs9858831	0.95[AFR][1000 genomes]
rs9859362	0.95[AFR][1000 genomes]
rs9859942	0.95[AFR][1000 genomes]
rs9877100	0.95[AFR][1000 genomes]
rs9882951	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1000756	chr3:179672703-179827373	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179689400-179710200	Weak transcription	Fetal Brain Male	brain
2	chr3:179700800-179721000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:179703000-179710200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:179703800-179725200	Weak transcription	Dnd41	blood
5	chr3:179708600-179710400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:179708800-179710400	Enhancers	HMEC	breast
7	chr3:179709200-179710400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:179709200-179710600	Enhancers	Brain Substantia Nigra	brain
9	chr3:179709400-179710200	Weak transcription	Brain Angular Gyrus	brain
10	chr3:179709400-179710800	Enhancers	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links