Variant report

Variant	rs9820617
Chromosome Location	chr3:43792048-43792049
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9838138	0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv876733	chr3:43768018-43854669	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43790200-43794200	Weak transcription	Fetal Intestine Large	intestine
2	chr3:43790200-43794200	Weak transcription	Hela-S3	cervix
3	chr3:43790200-43794800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:43790200-43795000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:43790200-43795000	Weak transcription	HSMMtube	muscle
6	chr3:43790200-43795000	Weak transcription	NH-A	brain
7	chr3:43790200-43795000	Weak transcription	Osteobl	bone
8	chr3:43790400-43793400	Weak transcription	HSMM	muscle
9	chr3:43790400-43794200	Weak transcription	Fetal Intestine Small	intestine
10	chr3:43790400-43794200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:43790400-43794200	Weak transcription	NHEK	skin
12	chr3:43790400-43794400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:43790400-43794400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:43790400-43795000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:43790400-43795000	Weak transcription	HMEC	breast
16	chr3:43790400-43795400	Weak transcription	A549	lung
17	chr3:43790600-43794200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:43790600-43794200	Weak transcription	NHLF	lung
19	chr3:43790600-43794400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:43790600-43794400	Weak transcription	HUVEC	blood vessel
21	chr3:43790600-43794800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:43790600-43795000	Weak transcription	Adipose Nuclei	Adipose
23	chr3:43790600-43796000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr3:43791000-43793800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:43791000-43794200	Weak transcription	NHDF-Ad	bronchial
26	chr3:43791600-43793400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:43791600-43793800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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