Variant report

Variant	rs9821183
Chromosome Location	chr3:142902719-142902720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1372288	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17470684	0.87[ASN][1000 genomes]
rs4553947	0.91[EUR][1000 genomes]
rs60818974	0.91[EUR][1000 genomes]
rs6775385	0.89[EUR][1000 genomes]
rs6785254	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs894180	0.91[EUR][1000 genomes]
rs920570	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9829667	0.91[EUR][1000 genomes]
rs9849247	0.91[EUR][1000 genomes]
rs9862637	0.89[EUR][1000 genomes]
rs9879103	0.91[EUR][1000 genomes]
rs990739	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757893	chr3:142720230-142962932	Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2759183	chr3:142720230-142964373	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv508250	chr3:142842454-142943722	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv34280	chr3:142887460-142962075	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv818171	chr3:142894411-142960273	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1009573	chr3:142896048-142959777	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142893200-142909200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:142900200-142903400	Enhancers	Primary hematopoietic stem cells	blood
3	chr3:142900800-142903000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr3:142901600-142903200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:142901600-142903200	Enhancers	Fetal Thymus	thymus
6	chr3:142901800-142902800	Weak transcription	Primary B cells from cord blood	blood
7	chr3:142901800-142902800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:142902000-142903000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr3:142902000-142903000	Flanking Active TSS	K562	blood
10	chr3:142902400-142908600	Weak transcription	Primary T cells from cord blood	blood
11	chr3:142902600-142903200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr3:142902600-142904800	Weak transcription	Dnd41	blood
13	chr3:142902600-142909200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr3:142902600-142909200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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