Variant report

Variant	rs9821780
Chromosome Location	chr3:99269923-99269924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13070310	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1851258	0.81[AMR][1000 genomes]
rs2089983	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3914294	0.86[AMR][1000 genomes]
rs4413343	0.84[AMR][1000 genomes]
rs4491947	0.84[AMR][1000 genomes]
rs4594655	0.84[AMR][1000 genomes]
rs62281766	0.83[AMR][1000 genomes]
rs6769362	0.86[AMR][1000 genomes]
rs9872283	0.86[AMR][1000 genomes]
rs9881223	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99267000-99270000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:99268600-99270000	Enhancers	NHDF-Ad	bronchial
3	chr3:99269000-99271800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:99269600-99270400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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