Variant report

Variant	rs9823848
Chromosome Location	chr3:160416908-160416909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9834778	0.92[EUR][1000 genomes]
rs9881758	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160413600-160417200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:160414200-160417000	Enhancers	NH-A	brain
3	chr3:160415400-160417000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:160415400-160417000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr3:160415400-160417000	Enhancers	HUVEC	blood vessel
6	chr3:160415600-160417000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:160415600-160417200	Enhancers	Stomach Mucosa	stomach
8	chr3:160416600-160417000	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr3:160416600-160419400	Weak transcription	NHLF	lung
10	chr3:160416600-160421800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr3:160416800-160417000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:160416800-160418800	Enhancers	Hela-S3	cervix
13	chr3:160416800-160421600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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