Variant report

Variant	rs9823977
Chromosome Location	chr3:97902005-97902006
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 277 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:246)

rs_ID	r²[population]
rs10212222	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10212442	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11711844	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11716683	0.86[ASN][1000 genomes]
rs11717559	0.86[ASN][1000 genomes]
rs11719433	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12487990	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12490240	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12490755	0.80[ASN][1000 genomes]
rs12498051	0.80[ASN][1000 genomes]
rs12695680	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12695682	0.81[ASN][1000 genomes]
rs13059290	0.80[ASN][1000 genomes]
rs13060486	0.83[ASN][1000 genomes]
rs13060569	0.80[ASN][1000 genomes]
rs13060763	0.80[ASN][1000 genomes]
rs13061180	0.80[ASN][1000 genomes]
rs13064891	0.83[ASN][1000 genomes]
rs13065259	0.83[ASN][1000 genomes]
rs13067607	0.83[ASN][1000 genomes]
rs13069991	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13070139	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13071373	0.82[ASN][1000 genomes]
rs13071754	0.82[ASN][1000 genomes]
rs13080640	0.80[ASN][1000 genomes]
rs13083770	0.83[ASN][1000 genomes]
rs13084315	0.87[AMR][1000 genomes]
rs13084481	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13084823	0.80[ASN][1000 genomes]
rs13084986	0.80[ASN][1000 genomes]
rs13085972	0.88[ASN][1000 genomes]
rs13088324	0.81[ASN][1000 genomes]
rs13088529	0.83[ASN][1000 genomes]
rs13088901	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13088925	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13089085	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13089594	0.83[ASN][1000 genomes]
rs13089648	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13090781	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13090994	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13091352	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13093005	0.82[ASN][1000 genomes]
rs13093180	0.83[ASN][1000 genomes]
rs13094850	0.82[ASN][1000 genomes]
rs13095222	0.83[ASN][1000 genomes]
rs13099950	0.80[ASN][1000 genomes]
rs13099965	0.82[ASN][1000 genomes]
rs13323695	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1908993	0.86[ASN][1000 genomes]
rs1908994	0.85[ASN][1000 genomes]
rs1908995	0.85[ASN][1000 genomes]
rs2047391	0.80[ASN][1000 genomes]
rs2047392	0.80[ASN][1000 genomes]
rs2291810	0.80[ASN][1000 genomes]
rs34043420	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34051821	0.80[EUR][1000 genomes]
rs34072146	0.82[ASN][1000 genomes]
rs34137690	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34225419	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34236895	0.83[ASN][1000 genomes]
rs34290035	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34302871	0.82[EUR][1000 genomes]
rs34305303	0.82[ASN][1000 genomes]
rs34332524	0.84[ASN][1000 genomes]
rs34424109	0.83[ASN][1000 genomes]
rs34428635	0.83[ASN][1000 genomes]
rs34448974	0.80[ASN][1000 genomes]
rs34554465	0.83[ASN][1000 genomes]
rs34637074	0.83[ASN][1000 genomes]
rs34672191	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34776005	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34800460	0.83[ASN][1000 genomes]
rs34818739	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34859603	0.80[ASN][1000 genomes]
rs34924704	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34931487	0.81[ASN][1000 genomes]
rs35042029	0.82[ASN][1000 genomes]
rs35100128	0.83[ASN][1000 genomes]
rs35127256	0.81[ASN][1000 genomes]
rs35221063	0.80[ASN][1000 genomes]
rs35239283	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35292867	0.83[ASN][1000 genomes]
rs35399810	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35515951	0.82[ASN][1000 genomes]
rs35518141	0.88[ASN][1000 genomes]
rs35594582	0.82[ASN][1000 genomes]
rs35694938	0.82[ASN][1000 genomes]
rs35734642	0.81[EUR][1000 genomes]
rs35814153	0.81[ASN][1000 genomes]
rs35847759	0.82[ASN][1000 genomes]
rs35915850	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36037993	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3828452	0.81[ASN][1000 genomes]
rs3828453	0.82[ASN][1000 genomes]
rs3828454	0.82[ASN][1000 genomes]
rs3828456	0.81[ASN][1000 genomes]
rs3828457	0.82[ASN][1000 genomes]
rs3828458	0.82[ASN][1000 genomes]
rs3828459	0.82[ASN][1000 genomes]
rs3828460	0.81[ASN][1000 genomes]
rs3828461	0.81[ASN][1000 genomes]
rs4260478	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4271951	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4282103	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4345108	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4358331	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4368543	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4376074	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4414896	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4446253	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4467498	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4508826	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4532173	0.81[ASN][1000 genomes]
rs4532174	0.81[ASN][1000 genomes]
rs4549314	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4602433	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4613504	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4621368	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4857080	0.83[ASN][1000 genomes]
rs4857081	0.83[ASN][1000 genomes]
rs4857082	0.83[ASN][1000 genomes]
rs4857319	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4857320	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4857321	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4857322	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4857326	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4857331	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4857333	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4857342	0.83[ASN][1000 genomes]
rs5023173	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55802233	0.83[ASN][1000 genomes]
rs56001215	0.83[ASN][1000 genomes]
rs57869805	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58188940	0.80[ASN][1000 genomes]
rs58401463	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58605422	0.82[ASN][1000 genomes]
rs59598356	0.83[ASN][1000 genomes]
rs61672522	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62267765	0.88[ASN][1000 genomes]
rs62267772	0.83[ASN][1000 genomes]
rs62267798	0.82[ASN][1000 genomes]
rs62267799	0.82[ASN][1000 genomes]
rs62267800	0.82[ASN][1000 genomes]
rs62267801	0.82[ASN][1000 genomes]
rs62267802	0.81[ASN][1000 genomes]
rs62267806	0.81[ASN][1000 genomes]
rs6439634	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6439635	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6439643	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6439653	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66496940	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67055113	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67191025	0.83[ASN][1000 genomes]
rs67472895	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67479571	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6765411	0.80[ASN][1000 genomes]
rs6765598	0.80[ASN][1000 genomes]
rs67662218	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6766605	0.81[ASN][1000 genomes]
rs6768197	0.80[ASN][1000 genomes]
rs6771800	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67743720	0.82[ASN][1000 genomes]
rs6775533	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6776813	0.80[ASN][1000 genomes]
rs6783141	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67838020	0.83[ASN][1000 genomes]
rs6786563	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6791813	0.81[ASN][1000 genomes]
rs6793032	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6796174	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6796474	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6798026	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6801837	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs68030363	0.82[ASN][1000 genomes]
rs6804026	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6805480	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs68064286	0.82[ASN][1000 genomes]
rs68091373	0.81[ASN][1000 genomes]
rs6809326	0.80[ASN][1000 genomes]
rs6809633	0.80[ASN][1000 genomes]
rs68151968	0.83[ASN][1000 genomes]
rs72922871	0.83[ASN][1000 genomes]
rs72927015	0.82[ASN][1000 genomes]
rs72927019	0.83[ASN][1000 genomes]
rs72927022	0.83[ASN][1000 genomes]
rs72927033	0.81[ASN][1000 genomes]
rs73135346	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73135348	0.83[ASN][1000 genomes]
rs73135351	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73853270	0.81[ASN][1000 genomes]
rs7611304	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7615262	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7622476	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7622669	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7629410	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7633825	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7633931	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7637018	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7644015	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7644016	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7644287	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7649734	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9289526	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9289532	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9289547	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9289548	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9289549	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9289550	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9809399	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9810324	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9811554	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9814466	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9819187	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9819661	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9819805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823970	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9825274	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9825830	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9826833	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9826872	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9830822	0.88[ASN][1000 genomes]
rs9836845	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9837490	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9838194	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9840421	0.80[ASN][1000 genomes]
rs9843054	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9848032	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9848199	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9854467	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9855162	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9857107	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9859733	0.83[ASN][1000 genomes]
rs9860633	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9860699	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9860882	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9861044	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9861160	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9865124	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9877417	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9879287	0.83[ASN][1000 genomes]
rs9879316	0.80[ASN][1000 genomes]
rs9879764	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9880245	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9881543	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9883025	0.82[ASN][1000 genomes]
rs9883962	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869347	chr3:97742604-98051633	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv877209	chr3:97806616-98049409	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv963576	chr3:97825434-98041343	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1004820	chr3:97852875-98169488	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv834773	chr3:97855362-98043888	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	esv3416921	chr3:97859875-97902358	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1000834	chr3:97859880-98095473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv877210	chr3:97866177-97992964	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	esv2566065	chr3:97873442-97931531	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv5601	chr3:97874279-97931369	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv3428925	chr3:97874391-97931104	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	esv3326206	chr3:97874447-97931276	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv513059	chr3:97875075-97932953	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	esv3430659	chr3:97878961-97933659	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	esv3504753	chr3:97881256-97920688	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
16	esv3504754	chr3:97881256-97920688	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
17	esv3520819	chr3:97882130-97921660	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
18	esv3520820	chr3:97882130-97921660	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
19	esv1792159	chr3:97887491-97919363	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
20	esv1810766	chr3:97887491-97919363	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
21	esv1823394	chr3:97887491-97919363	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
22	esv1824074	chr3:97887491-97919363	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
23	esv1836052	chr3:97887491-97919363	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
24	esv1836766	chr3:97887491-97919363	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
25	esv1850194	chr3:97887491-97919363	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
26	esv1850328	chr3:97887491-97919363	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
27	nsv442868	chr3:97887491-97919363	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
28	esv19096	chr3:97891026-97913396	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
29	esv2762341	chr3:97899320-97926120	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
30	esv13637	chr3:97899419-97913491	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
31	esv13127	chr3:97899419-97939393	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:97900400-97902400	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr3:97901000-97902200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:97901400-97902200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:97902000-97907000	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links