Variant report
| Variant | rs9824293 |
|---|---|
| Chromosome Location | chr3:159241272-159241273 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:159236194..159237893-chr3:159238621..159241336,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs13060099 | 0.81[CHB][hapmap];1.00[JPT][hapmap] |
| rs13100728 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1489912 | 0.90[CHB][hapmap];0.92[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap] |
| rs1515628 | 0.82[ASW][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];0.95[MKK][hapmap];0.81[TSI][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1826118 | 0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap] |
| rs2049115 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9290043 | 0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs9809080 | 0.82[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.95[MKK][hapmap];0.81[TSI][hapmap];0.90[YRI][hapmap] |
| rs9835214 | 0.80[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs993578 | 0.81[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv998949 | chr3:158774806-159394550 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv877695 | chr3:159152259-159254385 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv877696 | chr3:159184569-159257961 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv877697 | chr3:159198139-159259124 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | esv2644833 | chr3:159240023-159241414 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:159239400-159246000 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
