Variant report

Variant	rs9824429
Chromosome Location	chr3:56437072-56437073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11130518	0.82[EUR][1000 genomes]
rs1491159	0.82[EUR][1000 genomes]
rs1546060	0.81[EUR][1000 genomes]
rs1546061	0.82[EUR][1000 genomes]
rs6763636	0.82[EUR][1000 genomes]
rs6805882	0.82[EUR][1000 genomes]
rs9817231	0.82[EUR][1000 genomes]
rs9851360	0.82[EUR][1000 genomes]
rs9854966	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876816	chr3:56422771-56457705	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9824429	ERC2	cis	cerebellum	SCAN
rs9824429	C3orf51	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56424000-56447400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:56433600-56447800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:56434000-56447800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:56434800-56442800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:56436600-56457400	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links