Variant report

Variant	rs9824436
Chromosome Location	chr3:179645009-179645010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28681233	1.00[AFR][1000 genomes]
rs9809880	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs9819234	1.00[AFR][1000 genomes]
rs9831448	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179639600-179646200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:179640000-179647600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:179642200-179646200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:179642400-179646000	Weak transcription	Thymus	Thymus
5	chr3:179642400-179646400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:179642400-179651000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:179644200-179652000	Enhancers	Dnd41	blood
8	chr3:179644400-179645800	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:179644400-179645800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:179644400-179645800	Weak transcription	Brain Substantia Nigra	brain
11	chr3:179644400-179646000	Weak transcription	Brain Anterior Caudate	brain
12	chr3:179644400-179660000	Weak transcription	Pancreas	Pancrea
13	chr3:179644600-179646000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:179644600-179646200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:179645000-179645200	Enhancers	Brain Angular Gyrus	brain
16	chr3:179645000-179648400	Enhancers	Fetal Thymus	thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links