Variant report

Variant	rs9824808
Chromosome Location	chr3:78785432-78785433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17016573	1.00[MEX][hapmap]
rs7613523	1.00[MEX][hapmap]
rs9842992	0.86[AFR][1000 genomes]
rs9843545	0.89[AFR][1000 genomes]
rs9862664	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2753211	chr3:78784269-78809116	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78772000-78792200	Weak transcription	HepG2	liver
2	chr3:78778800-78785600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:78778800-78787200	Weak transcription	HSMM	muscle
4	chr3:78780000-78787000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:78780600-78785600	Weak transcription	NHDF-Ad	bronchial
6	chr3:78782200-78787000	Weak transcription	Brain Germinal Matrix	brain
7	chr3:78783200-78797000	Weak transcription	Fetal Lung	lung
8	chr3:78783400-78785600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:78783400-78786400	Weak transcription	Osteobl	bone
10	chr3:78783600-78785600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:78783600-78785600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:78783600-78786200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr3:78783600-78787000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:78783600-78787000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:78783600-78787200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:78783600-78787200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:78783600-78787200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:78783600-78787200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:78783600-78787200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr3:78783600-78787400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr3:78783800-78787200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:78783800-78803400	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:78784200-78787000	Weak transcription	HUVEC	blood vessel
24	chr3:78785200-78785600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:78785400-78785800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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