Variant report

Variant	rs9825135
Chromosome Location	chr3:151255570-151255571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:151253397..151255713-chr3:151264591..151266186,2	MCF-7	breast:
2	chr3:151254596..151257098-chr3:151270755..151272685,2	K562	blood:
3	chr3:151255227..151257598-chr3:151259355..151262093,2	MCF-7	breast:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10935854	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11920861	0.87[EUR][1000 genomes]
rs12485986	0.84[EUR][1000 genomes]
rs12496241	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4234323	0.87[EUR][1000 genomes]
rs4234324	0.84[EUR][1000 genomes]
rs4234326	0.81[EUR][1000 genomes]
rs4234327	0.81[EUR][1000 genomes]
rs4234328	0.85[EUR][1000 genomes]
rs4234329	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4256103	0.87[EUR][1000 genomes]
rs4256104	0.82[EUR][1000 genomes]
rs4257516	0.81[EUR][1000 genomes]
rs4266168	0.84[EUR][1000 genomes]
rs4273348	0.82[EUR][1000 genomes]
rs4296568	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4339091	0.84[EUR][1000 genomes]
rs4383490	0.87[EUR][1000 genomes]
rs4387942	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4402912	0.81[EUR][1000 genomes]
rs4423742	0.87[EUR][1000 genomes]
rs4452303	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4458346	0.87[EUR][1000 genomes]
rs4467429	0.87[EUR][1000 genomes]
rs4475011	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4518099	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4532110	0.82[EUR][1000 genomes]
rs4550806	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4550807	0.84[EUR][1000 genomes]
rs4583622	0.81[EUR][1000 genomes]
rs4605516	0.85[EUR][1000 genomes]
rs4618202	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4679835	0.80[EUR][1000 genomes]
rs4679847	0.84[EUR][1000 genomes]
rs4679848	0.81[EUR][1000 genomes]
rs4680474	0.87[EUR][1000 genomes]
rs4680484	0.84[EUR][1000 genomes]
rs4680487	0.83[EUR][1000 genomes]
rs6440749	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6440750	0.86[EUR][1000 genomes]
rs6440757	0.87[EUR][1000 genomes]
rs6440765	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6767984	0.86[EUR][1000 genomes]
rs6768085	0.86[EUR][1000 genomes]
rs6768853	0.87[EUR][1000 genomes]
rs6772583	0.87[EUR][1000 genomes]
rs6773513	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6774270	0.87[EUR][1000 genomes]
rs6775810	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6778090	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6779571	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6784030	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6785746	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6786811	0.87[EUR][1000 genomes]
rs6786901	0.85[EUR][1000 genomes]
rs6789689	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6792286	0.87[EUR][1000 genomes]
rs6800745	0.90[EUR][1000 genomes]
rs6810156	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7612205	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7615314	0.84[EUR][1000 genomes]
rs7615828	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7617483	0.82[EUR][1000 genomes]
rs7622835	0.85[EUR][1000 genomes]
rs7622862	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7623843	0.81[EUR][1000 genomes]
rs7624653	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7629176	0.83[EUR][1000 genomes]
rs7631871	0.87[EUR][1000 genomes]
rs7637276	0.84[EUR][1000 genomes]
rs7638109	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7643197	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9289848	0.85[EUR][1000 genomes]
rs9811627	0.84[EUR][1000 genomes]
rs9812692	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9815081	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9816549	0.84[EUR][1000 genomes]
rs9821160	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9821181	0.84[EUR][1000 genomes]
rs9825219	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9829893	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9830216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9840578	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9841068	0.81[EUR][1000 genomes]
rs9841913	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9855531	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9867936	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9876367	0.87[EUR][1000 genomes]
rs9876462	0.87[EUR][1000 genomes]
rs9880648	0.83[EUR][1000 genomes]
rs9881269	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9882955	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv877650	chr3:151174010-151314449	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151254000-151255600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:151254000-151256600	Weak transcription	Psoas Muscle	Psoas
3	chr3:151254000-151257000	Weak transcription	Fetal Stomach	stomach
4	chr3:151254200-151255600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:151254200-151255600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:151254200-151256400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:151254400-151261200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:151254600-151255800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:151254800-151256000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:151254800-151256600	Enhancers	Osteobl	bone
11	chr3:151254800-151257400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr3:151254800-151257400	Active TSS	Ovary	ovary
13	chr3:151255000-151255600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:151255000-151255800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:151255000-151256200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:151255000-151256600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:151255200-151256200	Enhancers	NHDF-Ad	bronchial
18	chr3:151255200-151256400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr3:151255200-151256400	Enhancers	Fetal Lung	lung
20	chr3:151255200-151257000	Enhancers	NH-A	brain
21	chr3:151255200-151257200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:151255400-151255800	Enhancers	HMEC	breast
23	chr3:151255400-151256000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr3:151255400-151256200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:151255400-151256400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr3:151255400-151256600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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