Variant report

Variant	rs9825784
Chromosome Location	chr3:99563571-99563572
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:99562459..99564499-chr3:99581056..99583363,3	MCF-7	breast:
2	chr3:99563302..99565936-chr3:99585256..99586921,2	K562	blood:
3	chr3:99562547..99565382-chr3:99565632..99567487,2	K562	blood:

Variant related genes	Relation type
ENSG00000168386	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9838086	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99537200-99594400	Weak transcription	Esophagus	oesophagus
2	chr3:99538000-99563600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr3:99538200-99584600	Weak transcription	Primary T cells from cord blood	blood
4	chr3:99544200-99564800	Weak transcription	K562	blood
5	chr3:99551200-99566000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr3:99557000-99573600	Weak transcription	Small Intestine	intestine
7	chr3:99557200-99567200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:99558800-99565000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:99559000-99578000	Weak transcription	HMEC	breast
10	chr3:99561600-99563800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:99561600-99563800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:99561600-99564000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:99561600-99564400	Enhancers	Osteobl	bone
14	chr3:99561800-99563600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:99561800-99563600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr3:99561800-99563600	Enhancers	Fetal Muscle Leg	muscle
17	chr3:99561800-99563600	Enhancers	NHLF	lung
18	chr3:99561800-99564000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr3:99561800-99565800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr3:99561800-99566600	Enhancers	NHDF-Ad	bronchial
21	chr3:99562000-99563800	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr3:99562000-99563800	Enhancers	Ovary	ovary
23	chr3:99562000-99563800	Enhancers	HSMM	muscle
24	chr3:99562000-99564200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr3:99562000-99565000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:99562000-99565000	Enhancers	Adipose Nuclei	Adipose
27	chr3:99562000-99565600	Enhancers	HUVEC	blood vessel
28	chr3:99562200-99564400	Weak transcription	Brain Hippocampus Middle	brain
29	chr3:99562200-99564800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr3:99562200-99573200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr3:99562200-99578000	Weak transcription	NHEK	skin
32	chr3:99562400-99563600	Enhancers	GM12878-XiMat	blood
33	chr3:99562400-99563800	Enhancers	Pancreas	Pancrea
34	chr3:99562400-99564400	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr3:99562400-99565600	Enhancers	Left Ventricle	heart
36	chr3:99562600-99563800	Enhancers	Fetal Lung	lung
37	chr3:99562600-99565000	Weak transcription	Brain Anterior Caudate	brain
38	chr3:99562600-99565000	Weak transcription	Fetal Heart	heart
39	chr3:99562600-99565000	Weak transcription	A549	lung
40	chr3:99562600-99565800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr3:99562600-99567000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:99562600-99578200	Weak transcription	Fetal Kidney	kidney
43	chr3:99562800-99564200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr3:99562800-99565000	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr3:99562800-99565000	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr3:99562800-99566600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:99562800-99567200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr3:99562800-99569800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr3:99562800-99580200	Weak transcription	Gastric	stomach
50	chr3:99563000-99565000	Weak transcription	Liver	Liver

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