Variant report

Variant	rs9826441
Chromosome Location	chr3:23120060-23120061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23119484..23121007-chr3:23156209..23158438,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1385545	0.96[ASN][1000 genomes]
rs28608529	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58502257	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9834018	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520551	chr3:23115291-23120060	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23105000-23121400	Weak transcription	Psoas Muscle	Psoas
2	chr3:23115000-23121400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:23115800-23121000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr3:23117200-23121000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:23117200-23121400	Weak transcription	Fetal Kidney	kidney
6	chr3:23117400-23121400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:23117400-23121400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:23117600-23121400	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:23118400-23121000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:23118400-23121200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:23118400-23121400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:23118400-23121400	Weak transcription	Adipose Nuclei	Adipose
13	chr3:23118600-23120800	Weak transcription	Fetal Heart	heart
14	chr3:23118600-23121400	Weak transcription	Fetal Lung	lung
15	chr3:23118600-23123000	Weak transcription	Aorta	Aorta
16	chr3:23119000-23122200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr3:23119200-23120200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr3:23119200-23121000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr3:23119200-23121000	Weak transcription	Fetal Muscle Leg	muscle
20	chr3:23119200-23121000	Weak transcription	HSMM	muscle
21	chr3:23119200-23121400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:23119200-23121400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr3:23119200-23122000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr3:23119400-23120800	Weak transcription	HSMMtube	muscle
25	chr3:23119400-23121200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr3:23119400-23121200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:23119400-23121400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:23119400-23121600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr3:23119400-23121600	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr3:23119400-23122000	Enhancers	H1 Cell Line	embryonic stem cell
31	chr3:23119400-23122000	Enhancers	H9 Cell Line	embryonic stem cell
32	chr3:23119400-23122000	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr3:23119600-23122200	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr3:23120000-23122000	Enhancers	HUES64 Cell Line	embryonic stem cell

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