Variant report

Variant	rs9826454
Chromosome Location	chr3:135953220-135953221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135929618..135932203-chr3:135951944..135954084,2	K562	blood:
2	chr3:135953105..135954994-chr3:135955237..135956991,2	MCF-7	breast:
3	chr3:135914453..135916703-chr3:135953216..135954828,2	K562	blood:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10222451	0.86[AFR][1000 genomes]
rs12695645	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13068210	0.94[AFR][1000 genomes]
rs13072038	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13316214	1.00[ASN][1000 genomes]
rs1604793	1.00[ASN][1000 genomes]
rs17200216	0.82[EUR][1000 genomes]
rs28519617	0.86[AFR][1000 genomes]
rs28634226	1.00[ASN][1000 genomes]
rs28669017	0.86[AFR][1000 genomes]
rs34031772	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34168675	1.00[ASN][1000 genomes]
rs34282798	1.00[ASN][1000 genomes]
rs34428695	1.00[ASN][1000 genomes]
rs34757183	1.00[ASN][1000 genomes]
rs34913797	1.00[ASN][1000 genomes]
rs35320690	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35326900	1.00[ASN][1000 genomes]
rs35522825	1.00[ASN][1000 genomes]
rs3905668	0.80[EUR][1000 genomes]
rs56398805	0.80[EUR][1000 genomes]
rs6439629	0.89[AFR][1000 genomes]
rs66890203	1.00[ASN][1000 genomes]
rs6786582	0.90[AFR][1000 genomes]
rs6796523	0.89[EUR][1000 genomes]
rs9810789	1.00[ASN][1000 genomes]
rs9812579	1.00[ASN][1000 genomes]
rs9813115	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818536	1.00[ASN][1000 genomes]
rs9823373	1.00[ASN][1000 genomes]
rs9837158	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9841529	1.00[ASN][1000 genomes]
rs9844666	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9866840	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870825	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9872178	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv508246	chr3:135922023-136038622	Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2760738	chr3:135943988-135957333	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links