Variant report

Variant	rs9827947
Chromosome Location	chr3:111864641-111864642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13319370	1.00[AFR][1000 genomes]
rs13434018	0.83[AFR][1000 genomes]
rs28479380	0.83[AFR][1000 genomes]
rs28480564	1.00[AFR][1000 genomes]
rs28688678	1.00[AFR][1000 genomes]
rs9835515	0.83[AFR][1000 genomes]
rs9843450	1.00[AFR][1000 genomes]
rs9851895	1.00[AFR][1000 genomes]
rs9860712	1.00[AFR][1000 genomes]
rs9866863	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv3323712	chr3:111861311-111890479	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111853400-111867400	Weak transcription	Gastric	stomach
2	chr3:111856200-111867400	Weak transcription	Thymus	Thymus
3	chr3:111856200-111867600	Weak transcription	Left Ventricle	heart
4	chr3:111863000-111867400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:111864400-111865200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links