Variant report

Variant	rs9828191
Chromosome Location	chr3:43182771-43182772
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10865926	0.92[AFR][1000 genomes]
rs4683359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs491970	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs535994	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs552472	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs614993	1.00[YRI][hapmap]
rs632013	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs664197	0.92[AFR][1000 genomes]
rs674118	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs939436	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv3784	chr3:43176397-43221254	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43181400-43184200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:43181400-43184200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:43181400-43184200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:43181400-43184200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:43182200-43184000	Weak transcription	Primary T cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links