Variant report

Variant	rs9828289
Chromosome Location	chr3:47406371-47406372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1024036	0.82[AFR][1000 genomes]
rs1091068	0.87[AFR][1000 genomes]
rs295431	0.87[AFR][1000 genomes]
rs295432	0.87[AFR][1000 genomes]
rs295443	0.84[AFR][1000 genomes]
rs295444	0.84[AFR][1000 genomes]
rs295445	0.84[AFR][1000 genomes]
rs295450	0.84[AFR][1000 genomes]
rs295453	0.87[AFR][1000 genomes]
rs295454	0.87[AFR][1000 genomes]
rs295455	0.87[AFR][1000 genomes]
rs295456	0.87[AFR][1000 genomes]
rs295459	0.87[AFR][1000 genomes]
rs448018	0.82[AFR][1000 genomes]
rs648226	0.87[AFR][1000 genomes]
rs6778673	0.86[AFR][1000 genomes]
rs6778687	0.80[AFR][1000 genomes]
rs7639121	0.80[AFR][1000 genomes]
rs807930	0.87[AFR][1000 genomes]
rs9828124	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	esv1807553	chr3:47393616-47470763	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv3802	chr3:47396674-47441951	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47401600-47407400	Weak transcription	Aorta	Aorta
2	chr3:47401600-47421200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:47404400-47406800	Weak transcription	HepG2	liver
4	chr3:47404400-47407000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:47404400-47407200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:47404400-47411000	Weak transcription	Right Atrium	heart
7	chr3:47404600-47406800	Weak transcription	Adipose Nuclei	Adipose
8	chr3:47404600-47406800	Weak transcription	NHEK	skin
9	chr3:47404600-47407000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr3:47404600-47407000	Weak transcription	Primary T cells from cord blood	blood
11	chr3:47404600-47410000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr3:47404800-47406600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr3:47404800-47407400	Weak transcription	Lung	lung
14	chr3:47405000-47406800	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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