Variant report

Variant	rs982907
Chromosome Location	chr6:45837611-45837612
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1375701	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1475781	0.85[AMR][1000 genomes]
rs2396559	0.91[EUR][1000 genomes]
rs6915630	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs868905	0.93[EUR][1000 genomes]
rs9381404	0.91[EUR][1000 genomes]
rs9381405	0.93[EUR][1000 genomes]
rs9381406	0.88[EUR][1000 genomes]
rs9463143	0.89[EUR][1000 genomes]
rs9472599	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv885866	chr6:45825244-45863826	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv528105	chr6:45826639-45840604	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45837200-45838200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:45837600-45837800	Enhancers	Brain Germinal Matrix	brain
3	chr6:45837600-45838000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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