Variant report

Variant	rs9830421
Chromosome Location	chr3:119025312-119025313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:119023465..119026044-chr3:119041239..119043477,3	MCF-7	breast:
2	chr3:119016211..119028042-chr3:119037960..119043695,12	MCF-7	breast:
3	chr3:119013595..119015497-chr3:119024900..119028569,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241155	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs6803331	1.00[ASN][1000 genomes]
rs72960637	0.94[ASN][1000 genomes]
rs72960640	0.94[ASN][1000 genomes]
rs72960642	0.94[ASN][1000 genomes]
rs7646935	1.00[ASN][1000 genomes]
rs9828213	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829694	chr3:119011488-119153579	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119014200-119029800	Weak transcription	Gastric	stomach
2	chr3:119014200-119032800	Weak transcription	Pancreas	Pancrea
3	chr3:119015000-119028600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:119015000-119041200	Weak transcription	Aorta	Aorta
5	chr3:119015200-119041000	Weak transcription	Fetal Kidney	kidney
6	chr3:119016000-119035400	Weak transcription	Fetal Brain Male	brain
7	chr3:119016000-119041000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr3:119016400-119040800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr3:119016400-119041000	Weak transcription	Fetal Intestine Small	intestine
10	chr3:119017400-119029800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:119017400-119040600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr3:119017600-119032400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr3:119018800-119032800	Weak transcription	Thymus	Thymus
14	chr3:119019200-119026000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:119019200-119040800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr3:119020400-119029800	Weak transcription	Colonic Mucosa	Colon
17	chr3:119020400-119040600	Weak transcription	Esophagus	oesophagus
18	chr3:119020800-119030400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:119020800-119032400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr3:119021000-119027200	Weak transcription	Brain Substantia Nigra	brain
21	chr3:119021000-119030400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr3:119021000-119032400	Weak transcription	Primary T cells from cord blood	blood
23	chr3:119021200-119041000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr3:119021200-119041000	Weak transcription	Fetal Thymus	thymus
25	chr3:119022000-119025800	Enhancers	NH-A	brain
26	chr3:119022000-119026200	Enhancers	HSMM	muscle
27	chr3:119022000-119032400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr3:119022200-119029000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr3:119022200-119040800	Weak transcription	Brain Angular Gyrus	brain
30	chr3:119022400-119029000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr3:119022400-119040600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr3:119022400-119041000	Weak transcription	Primary B cells from cord blood	blood
33	chr3:119022400-119041000	Weak transcription	Fetal Intestine Large	intestine
34	chr3:119022400-119041200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr3:119022600-119028800	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr3:119022600-119029000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr3:119022600-119029000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr3:119022600-119029000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr3:119022600-119032600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr3:119022600-119040600	Weak transcription	Primary B cells from peripheral blood	blood
41	chr3:119023400-119026400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:119023400-119027000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr3:119023400-119028200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr3:119023600-119026200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr3:119023600-119027200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr3:119023600-119028000	Weak transcription	HMEC	breast
47	chr3:119023600-119028200	Weak transcription	Lung	lung
48	chr3:119023600-119028400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr3:119023600-119029000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr3:119023600-119029000	Weak transcription	Spleen	Spleen

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