Variant report

Variant	rs9832343
Chromosome Location	chr3:134273027-134273028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 19 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35933983	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1002382	chr3:134239191-134358001	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:19)

SNP	Gene	Cis/trans	Tissue	Source
rs9832343	ANAPC13	Cis_1M	lymphoblastoid	RTeQTL
rs9832343	ANAPC13	cis	Artery Aorta	GTEx
rs9832343	ANAPC13	cis	Artery Tibial	GTEx
rs9832343	CEP63	cis	Muscle Skeletal	GTEx
rs9832343	CEP63	cis	Esophagus Mucosa	GTEx
rs9832343	CEP63	cis	Skin Sun Exposed Lower leg	GTEx
rs9832343	ANAPC13	cis	Heart Left Ventricle	GTEx
rs9832343	ANAPC13	cis	Thyroid	GTEx
rs9832343	ANAPC13	cis	lung	GTEx
rs9832343	ANAPC13	cis	Adipose Subcutaneous	GTEx
rs9832343	CEP63	cis	Artery Tibial	GTEx
rs9832343	ANAPC13	cis	Skin Sun Exposed Lower leg	GTEx
rs9832343	ANAPC13	cis	Esophagus Mucosa	GTEx
rs9832343	ANAPC13	cis	Stomach	GTEx
rs9832343	ANAPC13	cis	Esophagus Muscularis	GTEx
rs9832343	CEP63	cis	Esophagus Muscularis	GTEx
rs9832343	CEP63	Cis_1M	lymphoblastoid	RTeQTL
rs9832343	ANAPC13	cis	Muscle Skeletal	GTEx
rs9832343	ANAPC13	cis	Nerve Tibial	GTEx

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134246200-134280800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:134246600-134281800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:134250400-134282000	Weak transcription	Stomach Mucosa	stomach
4	chr3:134253200-134280000	Weak transcription	NH-A	brain
5	chr3:134256600-134287200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:134256800-134274400	Weak transcription	Fetal Heart	heart
7	chr3:134256800-134274800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:134256800-134280800	Weak transcription	Right Ventricle	heart
9	chr3:134267000-134275600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:134267800-134281200	Weak transcription	A549	lung
11	chr3:134269800-134273400	Weak transcription	Hela-S3	cervix
12	chr3:134269800-134278000	Weak transcription	Fetal Stomach	stomach
13	chr3:134269800-134278400	Weak transcription	Fetal Intestine Small	intestine
14	chr3:134269800-134278600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:134269800-134278600	Weak transcription	Esophagus	oesophagus
16	chr3:134269800-134279400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:134269800-134280800	Weak transcription	Gastric	stomach
18	chr3:134269800-134281800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:134269800-134282800	Weak transcription	NHLF	lung
20	chr3:134269800-134286400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:134269800-134296600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:134270000-134274000	Weak transcription	NHDF-Ad	bronchial
23	chr3:134270000-134280600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr3:134270000-134282800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:134270000-134283000	Weak transcription	Small Intestine	intestine
26	chr3:134270000-134286000	Weak transcription	Psoas Muscle	Psoas
27	chr3:134270200-134277400	Weak transcription	GM12878-XiMat	blood
28	chr3:134270200-134277600	Weak transcription	Brain Angular Gyrus	brain
29	chr3:134270200-134280800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr3:134270200-134281800	Weak transcription	NHEK	skin
31	chr3:134270400-134278600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:134270400-134279400	Weak transcription	Fetal Lung	lung
33	chr3:134270400-134280800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr3:134270400-134281000	Weak transcription	Fetal Kidney	kidney
35	chr3:134270600-134285200	Weak transcription	Brain Germinal Matrix	brain
36	chr3:134271200-134276600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:134271200-134276600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr3:134271200-134278200	Weak transcription	HepG2	liver
39	chr3:134271200-134280800	Weak transcription	Thymus	Thymus
40	chr3:134271200-134282600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr3:134271200-134284800	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr3:134271400-134277200	Weak transcription	Fetal Muscle Leg	muscle
43	chr3:134271400-134277200	Weak transcription	Left Ventricle	heart
44	chr3:134271400-134277400	Weak transcription	Aorta	Aorta
45	chr3:134271400-134277600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr3:134271400-134277600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr3:134271400-134277600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr3:134271400-134278600	Weak transcription	Pancreas	Pancrea
49	chr3:134271400-134280800	Weak transcription	Ovary	ovary
50	chr3:134271400-134282600	Weak transcription	Lung	lung

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