Variant report

Variant	rs9832405
Chromosome Location	chr3:79559914-79559915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10154835	0.87[AFR][1000 genomes]
rs12714476	0.80[JPT][hapmap]
rs13090440	0.80[JPT][hapmap]
rs1546037	0.81[JPT][hapmap]
rs17397244	0.80[JPT][hapmap]
rs28653275	0.86[AFR][1000 genomes]
rs4130991	0.81[JPT][hapmap]
rs4264688	0.95[YRI][hapmap]
rs4564923	1.00[YRI][hapmap]
rs62257608	0.86[AFR][1000 genomes]
rs6770755	0.81[JPT][hapmap]
rs6772426	0.80[CHB][hapmap]
rs7616713	0.82[AFR][1000 genomes]
rs7628507	0.83[AFR][1000 genomes]
rs7640018	0.88[AFR][1000 genomes]
rs9867953	0.96[CEU][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9873314	0.95[YRI][hapmap]
rs9880584	0.90[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834747	chr3:79441211-79591923	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	esv3394288	chr3:79545122-79715746	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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