Variant report

Variant	rs9833437
Chromosome Location	chr3:89283869-89283870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1512912	0.83[AFR][1000 genomes]
rs28885734	0.83[AFR][1000 genomes]
rs4449340	0.82[AFR][1000 genomes]
rs4857496	0.84[AFR][1000 genomes]
rs6551409	0.82[AFR][1000 genomes]
rs6770978	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6771477	0.84[AFR][1000 genomes]
rs7428532	0.80[AMR][1000 genomes]
rs872976	0.82[AFR][1000 genomes]
rs9817310	0.80[AMR][1000 genomes]
rs9837346	0.80[AMR][1000 genomes]
rs9838512	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9877953	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89278200-89286600	Weak transcription	Fetal Brain Female	brain
2	chr3:89282000-89284000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:89283200-89288000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:89283200-89288000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:89283200-89289000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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