Variant report

Variant	rs9834592
Chromosome Location	chr3:141084662-141084663
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr3:141084578-141086541	A549	lung:	n/a	n/a
2	TCF12	chr3:141084582-141087938	SK-N-SH	brain:	n/a	chr3:141086726-141086734 chr3:141087130-141087140
3	POLR2A	chr3:141083869-141089833	IMR90	lung:	n/a	n/a
4	POLR2A	chr3:141084657-141090024	U87	brain:	n/a	n/a
5	POLR2A	chr3:141084657-141089967	U87	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:141083112..141085653-chr3:141174087..141176079,2	MCF-7	breast:
2	chr3:141082960..141085877-chr3:141090535..141093207,3	K562	blood:
3	chr3:141082975..141085693-chr3:141086471..141089334,2	K562	blood:
4	chr3:141084115..141086523-chr3:141087109..141089663,3	MCF-7	breast:
5	chr3:141083628..141085582-chr3:141176171..141178080,2	K562	blood:

Variant related genes	Relation type
ZBTB38	TF binding region
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6800255	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7638882	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9874459	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141065800-141085200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:141077600-141085400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:141080000-141085000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:141080200-141086800	Weak transcription	Fetal Thymus	thymus
5	chr3:141080400-141084800	Weak transcription	Brain Angular Gyrus	brain
6	chr3:141080400-141084800	Weak transcription	Brain Substantia Nigra	brain
7	chr3:141080400-141084800	Weak transcription	Fetal Heart	heart
8	chr3:141080400-141084800	Weak transcription	Fetal Lung	lung
9	chr3:141080400-141084800	Weak transcription	HSMMtube	muscle
10	chr3:141080400-141085000	Weak transcription	Brain Anterior Caudate	brain
11	chr3:141080400-141085000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:141080400-141085200	Weak transcription	Pancreas	Pancrea
13	chr3:141080400-141085400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:141080400-141085400	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:141080400-141085400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:141080400-141085800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr3:141080600-141084800	Weak transcription	Colonic Mucosa	Colon
18	chr3:141080600-141084800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr3:141080600-141084800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:141080600-141085000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr3:141080600-141085200	Weak transcription	Small Intestine	intestine
22	chr3:141080600-141085400	Weak transcription	Aorta	Aorta
23	chr3:141080600-141085400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr3:141080600-141085400	Weak transcription	Ovary	ovary
25	chr3:141080600-141085400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr3:141080600-141086200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr3:141080800-141085000	Weak transcription	Colon Smooth Muscle	Colon
28	chr3:141080800-141085200	Weak transcription	Fetal Kidney	kidney
29	chr3:141080800-141086400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr3:141081400-141084800	Weak transcription	HSMM	muscle
31	chr3:141081600-141085800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:141083600-141084800	Enhancers	HMEC	breast
33	chr3:141083600-141085400	Enhancers	K562	blood
34	chr3:141083600-141087400	Enhancers	NHDF-Ad	bronchial
35	chr3:141083800-141084800	Enhancers	Hela-S3	cervix
36	chr3:141083800-141085400	Enhancers	Fetal Intestine Large	intestine
37	chr3:141084000-141085200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr3:141084000-141086800	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr3:141084000-141086800	Enhancers	NHLF	lung
40	chr3:141084000-141087400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr3:141084200-141084800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr3:141084200-141084800	Enhancers	A549	lung
43	chr3:141084200-141084800	Enhancers	NH-A	brain
44	chr3:141084200-141084800	Enhancers	NHEK	skin
45	chr3:141084200-141085200	Enhancers	Osteobl	bone
46	chr3:141084200-141085400	Enhancers	Muscle Satellite Cultured Cells	--
47	chr3:141084200-141085400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr3:141084200-141086600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr3:141084200-141086600	Enhancers	HepG2	liver
50	chr3:141084200-141086800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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