Variant report

Variant	rs9834968
Chromosome Location	chr3:69552204-69552205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13317316	1.00[EUR][1000 genomes]
rs13323954	1.00[EUR][1000 genomes]
rs17006276	1.00[EUR][1000 genomes]
rs28669920	1.00[EUR][1000 genomes]
rs60318629	1.00[EUR][1000 genomes]
rs72939327	1.00[EUR][1000 genomes]
rs72939335	1.00[EUR][1000 genomes]
rs72944904	1.00[EUR][1000 genomes]
rs72946160	1.00[EUR][1000 genomes]
rs7617831	1.00[EUR][1000 genomes]
rs7639402	1.00[EUR][1000 genomes]
rs9310167	1.00[EUR][1000 genomes]
rs9310170	1.00[EUR][1000 genomes]
rs9808923	1.00[EUR][1000 genomes]
rs9809678	1.00[EUR][1000 genomes]
rs9817476	1.00[EUR][1000 genomes]
rs9825685	1.00[EUR][1000 genomes]
rs9829925	1.00[EUR][1000 genomes]
rs9829928	1.00[EUR][1000 genomes]
rs9842372	1.00[EUR][1000 genomes]
rs9846358	1.00[EUR][1000 genomes]
rs9851338	1.00[EUR][1000 genomes]
rs9854296	1.00[EUR][1000 genomes]
rs9854835	1.00[EUR][1000 genomes]
rs9862006	1.00[EUR][1000 genomes]
rs9870280	1.00[EUR][1000 genomes]
rs9875933	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3426797	chr3:69433086-69777229	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69544800-69552800	Weak transcription	NHEK	skin
2	chr3:69549800-69552800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:69549800-69559600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:69550000-69552800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:69550000-69553000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:69550000-69553600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:69550000-69554400	Weak transcription	Fetal Heart	heart
8	chr3:69550000-69555000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr3:69550000-69555000	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:69550000-69557800	Weak transcription	Right Atrium	heart
11	chr3:69550000-69559800	Weak transcription	Spleen	Spleen
12	chr3:69550200-69552800	Weak transcription	HMEC	breast
13	chr3:69550200-69554000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:69550200-69554800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:69550200-69559600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr3:69550400-69552800	Weak transcription	HSMM	muscle
17	chr3:69550600-69553000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:69550600-69559200	Weak transcription	Brain Substantia Nigra	brain
19	chr3:69550800-69553000	Weak transcription	Fetal Lung	lung
20	chr3:69550800-69558600	Weak transcription	Primary monocytes fromperipheralblood	blood

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