Variant report

Variant	rs9835029
Chromosome Location	chr3:49980851-49980852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49977713..49979508-chr3:49980727..49984411,5	K562	blood:
2	chr3:49977713..49979804-chr3:49979930..49983021,3	K562	blood:

Variant related genes	Relation type
ENSG00000004534	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12330297	1.00[AFR][1000 genomes]
rs13316958	0.87[AFR][1000 genomes]
rs13318943	1.00[AFR][1000 genomes]
rs13323932	0.87[AFR][1000 genomes]
rs13324545	1.00[AFR][1000 genomes]
rs55968312	1.00[AFR][1000 genomes]
rs9811223	0.87[AFR][1000 genomes]
rs9819888	1.00[AFR][1000 genomes]
rs9825944	1.00[AFR][1000 genomes]
rs9828683	1.00[AFR][1000 genomes]
rs9835838	0.87[AFR][1000 genomes]
rs9849605	1.00[AFR][1000 genomes]
rs9850145	0.87[AFR][1000 genomes]
rs9852055	0.86[AFR][1000 genomes]
rs9862830	1.00[AFR][1000 genomes]
rs9863339	1.00[AFR][1000 genomes]
rs9864231	1.00[AFR][1000 genomes]
rs9866016	1.00[AFR][1000 genomes]
rs9875038	1.00[AFR][1000 genomes]
rs9883977	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834688	chr3:49811115-50019299	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv876767	chr3:49918751-50153356	Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv834689	chr3:49962930-50085119	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv965334	chr3:49967342-50000012	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
5	nsv1012903	chr3:49978765-50071878	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49978600-49981200	Enhancers	Primary B cells from peripheral blood	blood
2	chr3:49978600-49981800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:49978600-49983000	Weak transcription	Lung	lung
4	chr3:49978600-49986400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:49978600-49986800	Weak transcription	Left Ventricle	heart
6	chr3:49978600-49988800	Weak transcription	Aorta	Aorta
7	chr3:49978800-49981200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr3:49978800-49981200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr3:49978800-49982800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:49978800-49983200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:49978800-49983400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr3:49978800-49985400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:49978800-49986800	Weak transcription	Stomach Mucosa	stomach
14	chr3:49978800-49987000	Weak transcription	Small Intestine	intestine
15	chr3:49978800-49987400	Weak transcription	Brain Anterior Caudate	brain
16	chr3:49978800-49987400	Weak transcription	K562	blood
17	chr3:49978800-49987600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr3:49978800-49987600	Weak transcription	Brain Substantia Nigra	brain
19	chr3:49978800-49987600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr3:49978800-49987600	Weak transcription	A549	lung
21	chr3:49978800-49987600	Weak transcription	HUVEC	blood vessel
22	chr3:49978800-49987800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr3:49978800-50000600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr3:49978800-50004800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:49978800-50009600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr3:49978800-50009600	Weak transcription	Fetal Kidney	kidney
27	chr3:49978800-50041000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr3:49979000-49981200	Weak transcription	HSMM	muscle
29	chr3:49979000-49982800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr3:49979000-49982800	Weak transcription	Fetal Intestine Large	intestine
31	chr3:49979000-49982800	Weak transcription	Fetal Muscle Leg	muscle
32	chr3:49979000-49983200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr3:49979000-49984800	Weak transcription	Colon Smooth Muscle	Colon
34	chr3:49979000-49985800	Weak transcription	Esophagus	oesophagus
35	chr3:49979000-49986800	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr3:49979000-49987000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr3:49979000-49987400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr3:49979000-49987400	Weak transcription	Gastric	stomach
39	chr3:49979000-49987400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr3:49979000-49987400	Weak transcription	Hela-S3	cervix
41	chr3:49979000-49987400	Weak transcription	NH-A	brain
42	chr3:49979000-49987400	Weak transcription	NHEK	skin
43	chr3:49979000-49987600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:49979000-49987600	Weak transcription	Brain Hippocampus Middle	brain
45	chr3:49979000-49987600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr3:49979000-49987600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr3:49979000-49987600	Weak transcription	Fetal Heart	heart
48	chr3:49979000-49987600	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr3:49979000-49987600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr3:49979000-49987600	Weak transcription	HMEC	breast

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