Variant report
| Variant | rs9835769 |
|---|---|
| Chromosome Location | chr3:159239866-159239867 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:159236194..159237893-chr3:159238621..159241336,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10936177 | 0.87[CEU][hapmap] |
| rs12638026 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs13060099 | 0.91[YRI][hapmap] |
| rs13073941 | 0.83[CEU][hapmap] |
| rs1489912 | 0.90[YRI][hapmap] |
| rs16830408 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1826118 | 0.90[YRI][hapmap] |
| rs2049115 | 0.91[YRI][hapmap] |
| rs2196619 | 0.95[CEU][hapmap];0.81[JPT][hapmap] |
| rs2200883 | 1.00[CEU][hapmap];0.86[CHB][hapmap] |
| rs6441263 | 0.87[CEU][hapmap] |
| rs7635938 | 0.83[CEU][hapmap] |
| rs9820583 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap] |
| rs9878126 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs993578 | 0.91[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv998949 | chr3:158774806-159394550 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv877695 | chr3:159152259-159254385 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv877696 | chr3:159184569-159257961 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv877697 | chr3:159198139-159259124 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:159239400-159246000 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
