Variant report

Variant	rs9836083
Chromosome Location	chr3:54815732-54815733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13314992	0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs13325247	0.85[AFR][1000 genomes]
rs1366034	1.00[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs2217229	1.00[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs9311540	0.82[AFR][1000 genomes]
rs9821193	0.84[AFR][1000 genomes]
rs9836378	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9856390	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs9879439	0.95[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54807600-54836000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:54814600-54816200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:54815200-54815800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:54815200-54816000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr3:54815200-54816000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:54815200-54816000	Enhancers	Psoas Muscle	Psoas
7	chr3:54815400-54816000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr3:54815600-54815800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr3:54815600-54816000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:54815600-54817000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:54815600-54823800	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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