Variant report

Variant	rs9836418
Chromosome Location	chr3:20101192-20101193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:20081053..20084896-chr3:20098793..20102867,5	K562	blood:
2	chr3:20079576..20083677-chr3:20098793..20102064,4	K562	blood:

Variant related genes	Relation type
ENSG00000114166	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10084714	0.81[EUR][1000 genomes]
rs1124376	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11712709	0.83[EUR][1000 genomes]
rs12488369	0.82[EUR][1000 genomes]
rs12490215	0.82[EUR][1000 genomes]
rs17006610	0.82[EUR][1000 genomes]
rs28716666	0.82[EUR][1000 genomes]
rs41285057	0.83[EUR][1000 genomes]
rs4417886	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56042248	0.82[EUR][1000 genomes]
rs56117426	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61138004	0.83[EUR][1000 genomes]
rs61457790	0.83[EUR][1000 genomes]
rs62243080	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62243081	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62243098	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62243100	0.83[EUR][1000 genomes]
rs62243131	0.81[EUR][1000 genomes]
rs6550307	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67660889	0.80[EUR][1000 genomes]
rs67713322	0.83[EUR][1000 genomes]
rs6771941	0.82[EUR][1000 genomes]
rs6774367	0.81[EUR][1000 genomes]
rs6791385	0.80[EUR][1000 genomes]
rs6793985	0.81[EUR][1000 genomes]
rs6807771	0.81[EUR][1000 genomes]
rs7618597	0.81[EUR][1000 genomes]
rs7639282	0.81[EUR][1000 genomes]
rs9819628	0.83[EUR][1000 genomes]
rs9819739	0.83[EUR][1000 genomes]
rs9828701	0.82[EUR][1000 genomes]
rs9855900	0.83[EUR][1000 genomes]
rs9857135	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825914	chr3:19549859-20137270	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv1833006	chr3:19562271-20389045	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv1833139	chr3:19579860-20121349	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1010613	chr3:19942032-20461486	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	esv1826030	chr3:19972766-20170581	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv1825988	chr3:19976375-20102773	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	esv1826830	chr3:19982972-20632072	Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
8	nsv997486	chr3:20006702-20113989	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	esv1829542	chr3:20009231-20384627	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
10	nsv834627	chr3:20068115-20227975	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
11	nsv433359	chr3:20090908-20587572	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
12	nsv470450	chr3:20096735-20389045	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:20086200-20102800	Weak transcription	Fetal Intestine Small	intestine
2	chr3:20096600-20106400	Weak transcription	Fetal Intestine Large	intestine
3	chr3:20096800-20102600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr3:20097200-20104600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:20097200-20106400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:20097400-20102400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:20098400-20102200	Weak transcription	Primary T cells from cord blood	blood
8	chr3:20098600-20101800	Weak transcription	Primary B cells from cord blood	blood
9	chr3:20098800-20102400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:20099000-20101400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:20099000-20102400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr3:20099000-20122600	Weak transcription	Aorta	Aorta
13	chr3:20099200-20102600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr3:20099200-20106000	Weak transcription	Right Ventricle	heart
15	chr3:20099400-20101400	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr3:20099400-20101600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr3:20099400-20102000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr3:20099400-20102000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:20099400-20102200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:20099400-20102200	Weak transcription	Fetal Thymus	thymus
21	chr3:20099400-20102400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:20099400-20102400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr3:20099400-20102400	Weak transcription	A549	lung
24	chr3:20099400-20102400	Weak transcription	GM12878-XiMat	blood
25	chr3:20099400-20102600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr3:20099400-20102600	Weak transcription	HSMM	muscle
27	chr3:20099400-20102600	Weak transcription	NHLF	lung
28	chr3:20099400-20105400	Weak transcription	Brain Angular Gyrus	brain
29	chr3:20099400-20105800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr3:20099400-20106400	Weak transcription	Ovary	ovary
31	chr3:20099400-20106600	Weak transcription	Pancreas	Pancrea
32	chr3:20099400-20108600	Weak transcription	Fetal Stomach	stomach
33	chr3:20099400-20112600	Weak transcription	HSMMtube	muscle
34	chr3:20099400-20112800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr3:20099400-20122600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr3:20099400-20122800	Weak transcription	Lung	lung
37	chr3:20099600-20102200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr3:20099600-20102200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr3:20099600-20102200	Weak transcription	Adipose Nuclei	Adipose
40	chr3:20099600-20102200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr3:20099600-20102200	Weak transcription	Hela-S3	cervix
42	chr3:20099600-20102200	Weak transcription	HMEC	breast
43	chr3:20099600-20102200	Weak transcription	Osteobl	bone
44	chr3:20099600-20102400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr3:20099600-20102400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr3:20099600-20102400	Weak transcription	Liver	Liver
47	chr3:20099600-20102400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr3:20099600-20102400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr3:20099600-20102400	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr3:20099600-20102400	Weak transcription	NHDF-Ad	bronchial

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