Variant report

Variant	rs9836780
Chromosome Location	chr3:45833842-45833843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1883091	1.00[YRI][hapmap]
rs1883092	1.00[YRI][hapmap]
rs2286487	1.00[YRI][hapmap]
rs2633734	1.00[YRI][hapmap]
rs9823284	1.00[YRI][hapmap]
rs9830944	1.00[YRI][hapmap]
rs9868648	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45826800-45835600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:45829600-45834400	Weak transcription	Thymus	Thymus
3	chr3:45832000-45834600	Enhancers	Fetal Thymus	thymus
4	chr3:45832400-45834800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr3:45833000-45842000	Weak transcription	Dnd41	blood
6	chr3:45833200-45834600	Enhancers	Primary B cells from peripheral blood	blood
7	chr3:45833400-45834000	Strong transcription	Fetal Intestine Small	intestine
8	chr3:45833400-45834400	Enhancers	Primary B cells from cord blood	blood
9	chr3:45833600-45834600	Enhancers	Pancreas	Pancrea
10	chr3:45833800-45835000	Enhancers	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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