Variant report

Variant	rs9837357
Chromosome Location	chr3:112997931-112997932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112995543..112998104-chr3:113010327..113013877,3	MCF-7	breast:
2	chr3:112986625..112989851-chr3:112997054..112999009,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144857	Chromatin interaction
ENSG00000206530	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10511324	0.90[EUR][1000 genomes]
rs13326562	0.81[EUR][1000 genomes]
rs1499898	0.91[AFR][1000 genomes]
rs16860720	0.91[AFR][1000 genomes]
rs16860734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28679287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3995908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6438134	0.95[EUR][1000 genomes]
rs7652801	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9288980	0.90[EUR][1000 genomes]
rs9811168	0.81[EUR][1000 genomes]
rs9819129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9820139	0.91[AFR][1000 genomes]
rs9820627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9823770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9831049	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9831364	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9831793	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9832953	0.95[AFR][1000 genomes]
rs9836199	0.81[EUR][1000 genomes]
rs9840485	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9851183	0.81[EUR][1000 genomes]
rs9853439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9863114	0.81[EUR][1000 genomes]
rs9864630	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9869371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9872998	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv829677	chr3:112857075-113038987	Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv877348	chr3:112914756-113012509	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112984800-112998400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:112984800-113016400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:112988000-113003000	Strong transcription	Placenta Amnion	Placenta Amnion
4	chr3:112990400-113036000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:112990600-113004000	Weak transcription	NHEK	skin
6	chr3:112991800-113006400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:112993800-113036000	Weak transcription	Right Ventricle	heart
8	chr3:112995200-112999400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:112995200-113001200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:112995200-113016000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:112995200-113022400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:112995400-112998200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:112995400-113006000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:112995400-113006200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:112995400-113024000	Weak transcription	Aorta	Aorta
16	chr3:112995400-113035800	Weak transcription	Lung	lung
17	chr3:112995600-112998200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr3:112995600-113006400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:112995600-113008400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:112995800-112998400	Enhancers	Primary B cells from peripheral blood	blood
21	chr3:112995800-112998400	Genic enhancers	Fetal Muscle Trunk	muscle
22	chr3:112995800-112999400	Weak transcription	Fetal Kidney	kidney
23	chr3:112995800-112999600	Weak transcription	HSMMtube	muscle
24	chr3:112995800-113004000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:112995800-113006600	Weak transcription	Fetal Brain Male	brain
26	chr3:112995800-113013000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr3:112995800-113035800	Weak transcription	Thymus	Thymus
28	chr3:112996000-112998000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr3:112996000-113000000	Weak transcription	Pancreas	Pancrea
30	chr3:112996000-113005800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:112996000-113025400	Weak transcription	Small Intestine	intestine
32	chr3:112996200-112998400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:112996200-112999400	Weak transcription	Fetal Thymus	thymus
34	chr3:112996200-113000400	Weak transcription	Stomach Mucosa	stomach
35	chr3:112996200-113000400	Strong transcription	NHDF-Ad	bronchial
36	chr3:112996200-113001200	Strong transcription	Fetal Lung	lung
37	chr3:112996200-113002000	Weak transcription	NH-A	brain
38	chr3:112996200-113003000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr3:112996200-113004400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr3:112996200-113005800	Weak transcription	Osteobl	bone
41	chr3:112996200-113034400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr3:112996400-113003600	Weak transcription	Brain Angular Gyrus	brain
43	chr3:112996400-113004600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr3:112996400-113046400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr3:112996600-112998800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
46	chr3:112996600-113004200	Strong transcription	Colon Smooth Muscle	Colon
47	chr3:112996800-112998600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr3:112996800-113002000	Strong transcription	Fetal Intestine Large	intestine
49	chr3:112996800-113003200	Strong transcription	Esophagus	oesophagus
50	chr3:112996800-113004200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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