Variant report

Variant	rs9838061
Chromosome Location	chr3:141009418-141009419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141007649..141010539-chr3:141012059..141015009,2	K562	blood:
2	chr3:140979092..140980745-chr3:141007999..141010139,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10935427	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10935428	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1567558	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1567559	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2137016	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs938071	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9816975	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9819731	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877551	chr3:140970556-141029860	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140961200-141012600	Weak transcription	Aorta	Aorta
2	chr3:140979000-141013200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:140981200-141013200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:140981200-141013400	Weak transcription	Colonic Mucosa	Colon
5	chr3:140983600-141021600	Weak transcription	Esophagus	oesophagus
6	chr3:140988200-141022600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:140993200-141014200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:140994600-141012400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:140994600-141013400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:140996000-141012400	Strong transcription	Thymus	Thymus
11	chr3:140996200-141012400	Strong transcription	Primary T cells from cord blood	blood
12	chr3:140996400-141012800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:140997200-141013800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:140998000-141012800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr3:140998200-141010400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr3:140998200-141010600	Weak transcription	Psoas Muscle	Psoas
17	chr3:140998200-141012400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:140998200-141013400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:140998400-141010400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:140998400-141011400	Weak transcription	Liver	Liver
21	chr3:140998600-141012400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr3:140998600-141013800	Weak transcription	Fetal Brain Male	brain
23	chr3:140998800-141012000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:140998800-141012600	Strong transcription	Fetal Thymus	thymus
25	chr3:140999000-141009800	Weak transcription	Brain Substantia Nigra	brain
26	chr3:140999200-141014000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:140999400-141014000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:140999800-141010400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr3:140999800-141010800	Weak transcription	Fetal Intestine Large	intestine
30	chr3:141000000-141012200	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr3:141001200-141010000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr3:141001400-141010400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr3:141001400-141010600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr3:141001400-141011400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr3:141001800-141010400	Weak transcription	Brain Angular Gyrus	brain
36	chr3:141001800-141010600	Weak transcription	Lung	lung
37	chr3:141003000-141012800	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr3:141004000-141012600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr3:141005400-141009600	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr3:141005400-141010200	Strong transcription	Fetal Stomach	stomach
41	chr3:141005400-141011800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr3:141005400-141012000	Strong transcription	Fetal Intestine Small	intestine
43	chr3:141005600-141012000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr3:141005800-141010000	Strong transcription	Fetal Muscle Trunk	muscle
45	chr3:141005800-141012400	Strong transcription	Fetal Brain Female	brain
46	chr3:141006000-141012800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr3:141006400-141010600	Weak transcription	Placenta	Placenta
48	chr3:141006600-141010000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr3:141006600-141012600	Weak transcription	A549	lung
50	chr3:141007000-141013000	Weak transcription	Rectal Mucosa Donor 29	rectum

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