Variant report

Variant	rs9838082
Chromosome Location	chr3:112637316-112637317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10934190	0.80[AFR][1000 genomes]
rs10934192	0.80[AFR][1000 genomes]
rs10934193	0.80[AFR][1000 genomes]
rs13326243	0.80[AFR][1000 genomes]
rs1500878	0.87[ASN][1000 genomes]
rs1971986	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2101440	0.85[EUR][1000 genomes]
rs2399436	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28859668	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28867393	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4234417	0.80[AFR][1000 genomes]
rs4478054	0.84[ASN][1000 genomes]
rs4571210	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4682120	0.80[AFR][1000 genomes]
rs4682444	0.80[EUR][1000 genomes]
rs6438111	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6438112	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6438113	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6438114	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6765367	0.84[EUR][1000 genomes]
rs6765379	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6791672	0.80[EUR][1000 genomes]
rs7652536	0.86[EUR][1000 genomes]
rs9818564	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9868839	0.86[EUR][1000 genomes]
rs9875551	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9883255	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv3501334	chr3:112546820-112648766	Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3501335	chr3:112546820-112648766	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112628000-112641800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:112628000-112642000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:112628000-112642000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr3:112633400-112650800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr3:112635400-112642000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr3:112635400-112650600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr3:112635600-112640800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr3:112635600-112641200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr3:112635600-112646000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr3:112635600-112650400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr3:112636000-112643600	Weak transcription	Primary T cells from cord blood	blood
12	chr3:112636400-112642000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr3:112637000-112642000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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