Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13316449	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1391354	0.94[ASN][1000 genomes]
rs1529058	0.84[ASN][1000 genomes]
rs1844238	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1852804	0.84[ASN][1000 genomes]
rs1906701	0.84[ASN][1000 genomes]
rs2201817	0.83[ASN][1000 genomes]
rs2698373	0.84[ASN][1000 genomes]
rs2958074	0.84[ASN][1000 genomes]
rs4145122	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4145123	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6763699	0.84[ASN][1000 genomes]
rs6778463	0.95[ASN][1000 genomes]
rs6785820	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6795186	0.84[ASN][1000 genomes]
rs7623819	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7625425	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7629440	0.84[ASN][1000 genomes]
rs7633973	0.84[ASN][1000 genomes]
rs7645369	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7648356	0.84[ASN][1000 genomes]
rs973208	0.85[ASN][1000 genomes]
rs9843462	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2763292	chr3:111120319-111131539	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111119200-111124000	Weak transcription	Aorta	Aorta

Quick Search: