Variant report

Variant	rs9838430
Chromosome Location	chr3:156471713-156471714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11709829	0.86[YRI][hapmap]
rs12485328	0.83[CEU][hapmap]
rs12696042	0.83[CEU][hapmap]
rs13067180	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13068223	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs13092225	0.81[CEU][hapmap]
rs1430408	0.82[ASN][1000 genomes]
rs1469536	0.85[YRI][hapmap]
rs344025	0.84[ASN][1000 genomes]
rs344026	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6766154	0.82[CEU][hapmap]
rs7617108	0.81[CEU][hapmap]
rs9822953	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs985855	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156470200-156471800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:156470200-156471800	Enhancers	NHDF-Ad	bronchial
3	chr3:156470200-156477800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:156470800-156478000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:156471000-156472000	Weak transcription	Fetal Kidney	kidney
6	chr3:156471000-156478400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:156471200-156478000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:156471600-156477800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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