Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11714384	0.91[ASN][1000 genomes]
rs11714431	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12330472	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1461759	0.84[AMR][1000 genomes]
rs1461761	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1461762	0.84[AMR][1000 genomes]
rs1461763	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2399302	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2399303	0.84[AMR][1000 genomes]
rs2399304	0.84[AMR][1000 genomes]
rs2399305	0.84[AMR][1000 genomes]
rs2399306	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2712996	1.00[ASN][1000 genomes]
rs2895368	0.84[AMR][1000 genomes]
rs6776614	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6790010	0.87[AMR][1000 genomes]
rs7612388	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7612484	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7612501	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9819251	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9830369	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9839173	0.91[EUR][1000 genomes]
rs9856929	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9862390	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv460816	chr3:109878008-110044601	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv591271	chr3:109878008-110044601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv829668	chr3:109956403-110095215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv877334	chr3:109983269-110044601	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109984200-109990600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:109984400-109986800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:109985000-109992000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:109985200-109986200	Weak transcription	Ovary	ovary
5	chr3:109985200-109991000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:109985400-109991000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:109985600-109990600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:109986000-109987600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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