Variant report
Variant | rs9839707 |
---|---|
Chromosome Location | chr3:61254330-61254331 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10510864 | 0.90[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs11130825 | 0.82[ASN][1000 genomes] |
rs11707666 | 0.96[ASN][1000 genomes] |
rs11711696 | 0.96[ASN][1000 genomes] |
rs12486043 | 0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12488069 | 0.80[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12495661 | 0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs12497257 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12498118 | 0.83[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1453741 | 0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1524018 | 0.86[ASN][1000 genomes] |
rs17064628 | 0.80[CHB][hapmap];0.83[JPT][hapmap] |
rs17064657 | 0.90[CHB][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs17064663 | 0.80[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs17064715 | 0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1851784 | 0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs34371746 | 0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4458366 | 0.95[ASN][1000 genomes] |
rs6799813 | 0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs879365 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs9839448 | 0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs9871848 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs9880846 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv876866 | chr3:61054494-61310328 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
2 | nsv876867 | chr3:61054494-61474575 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv432423 | chr3:61100255-61606060 | Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
4 | nsv876868 | chr3:61145050-61282503 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv532626 | chr3:61159646-61388418 | Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
6 | nsv1008399 | chr3:61176965-61461349 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv998982 | chr3:61252469-61364001 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:61248400-61255200 | Weak transcription | Left Ventricle | heart |