Variant report

Variant	rs9839825
Chromosome Location	chr3:139948276-139948277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10212107	1.00[CEU][hapmap]
rs10212135	1.00[CEU][hapmap]
rs10212140	1.00[CEU][hapmap]
rs1026780	1.00[CEU][hapmap]
rs1159437	1.00[CEU][hapmap]
rs11927470	1.00[CEU][hapmap]
rs13088193	1.00[CEU][hapmap]
rs1319583	1.00[CEU][hapmap]
rs1479853	1.00[CEU][hapmap]
rs1479854	1.00[CEU][hapmap]
rs1479855	1.00[CEU][hapmap]
rs1479858	1.00[CEU][hapmap]
rs1479859	1.00[CEU][hapmap]
rs1479860	1.00[CEU][hapmap]
rs1479861	1.00[CEU][hapmap]
rs1600401	1.00[CEU][hapmap]
rs1904486	1.00[CEU][hapmap]
rs1993960	1.00[CEU][hapmap]
rs2127471	1.00[CEU][hapmap]
rs2127472	1.00[CEU][hapmap]
rs3903534	1.00[CEU][hapmap]
rs3943278	1.00[CEU][hapmap]
rs4368463	1.00[CEU][hapmap]
rs4393867	1.00[CEU][hapmap]
rs4638925	1.00[CEU][hapmap]
rs4683489	1.00[CEU][hapmap]
rs4683823	1.00[CEU][hapmap]
rs4683827	1.00[CEU][hapmap]
rs4683828	1.00[CEU][hapmap]
rs6769101	1.00[CEU][hapmap]
rs6769574	1.00[CEU][hapmap]
rs6773289	1.00[CEU][hapmap]
rs6786062	1.00[CEU][hapmap]
rs6797439	1.00[CEU][hapmap]
rs6804095	1.00[CEU][hapmap]
rs899624	1.00[CEU][hapmap]
rs931123	1.00[CEU][hapmap]
rs931125	1.00[CEU][hapmap]
rs931126	1.00[CEU][hapmap]
rs9828897	1.00[CEU][hapmap]
rs9877035	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv432486	chr3:139924092-140049121	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv829740	chr3:139925767-140106169	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139938600-139953600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:139942800-139952000	Weak transcription	HSMMtube	muscle
3	chr3:139948000-139948400	Enhancers	Colon Smooth Muscle	Colon

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