Variant report

Variant	rs9840707
Chromosome Location	chr3:24577018-24577019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24575483..24577164-chr3:24577911..24580560,3	K562	blood:
2	chr3:24575483..24577164-chr3:24577911..24580259,2	K562	blood:
3	chr3:24561626..24564572-chr3:24575523..24578700,4	K562	blood:
4	chr3:24560064..24565093-chr3:24569358..24577733,9	K562	blood:
5	chr3:24569309..24573994-chr3:24576073..24580821,8	K562	blood:

Variant related genes	Relation type
ENSG00000265028	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11129154	0.84[CEU][hapmap]
rs11709849	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12487267	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12490602	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12496683	0.92[CEU][hapmap];0.86[AMR][1000 genomes]
rs12630689	0.86[EUR][1000 genomes]
rs12632106	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12634948	0.89[CHB][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12635598	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13064705	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13068136	0.89[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13089994	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17542646	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17614600	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17620579	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs17621537	0.84[CEU][hapmap]
rs1808770	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34241544	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35541876	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35878395	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4577409	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4858624	0.81[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap]
rs892941	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9818012	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24566200-24591800	Weak transcription	Psoas Muscle	Psoas
2	chr3:24575400-24577600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:24575600-24579800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:24575800-24579600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:24575800-24580600	Weak transcription	Colon Smooth Muscle	Colon

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