Variant report

Variant	rs9841084
Chromosome Location	chr3:94491288-94491289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13314320	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13324772	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13324801	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1368197	0.84[AMR][1000 genomes]
rs1368198	0.83[AMR][1000 genomes]
rs1368199	0.80[AMR][1000 genomes]
rs2163680	0.80[AMR][1000 genomes]
rs2163682	0.80[AMR][1000 genomes]
rs4241479	0.81[AMR][1000 genomes]
rs4462967	0.87[ASN][1000 genomes]
rs4493433	0.84[AMR][1000 genomes]
rs4583664	0.82[AMR][1000 genomes]
rs6780216	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7427844	0.81[AMR][1000 genomes]
rs7642399	0.84[AMR][1000 genomes]
rs7646332	0.84[AMR][1000 genomes]
rs7652148	0.84[AMR][1000 genomes]
rs7653317	0.84[AMR][1000 genomes]
rs7653599	0.84[AMR][1000 genomes]
rs9637418	0.84[AMR][1000 genomes]
rs9814299	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9832016	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9832891	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9842192	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9842195	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9842368	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9847887	0.84[AMR][1000 genomes]
rs9848372	0.83[AMR][1000 genomes]
rs9867704	0.82[AMR][1000 genomes]
rs9872890	0.84[AMR][1000 genomes]
rs9879048	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869241	chr3:93527675-94504491	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1004176	chr3:93654100-94502551	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv460763	chr3:94384332-94596072	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590988	chr3:94384332-94596072	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv877167	chr3:94430430-94554720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv877168	chr3:94430430-94614333	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv460764	chr3:94479849-94654181	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv590989	chr3:94479849-94654181	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv1803616	chr3:94487032-94538580	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94491200-94491800	Enhancers	Rectal Mucosa Donor 31	rectum

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