Variant report

Variant	rs9841097
Chromosome Location	chr3:68809059-68809060
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11920862	0.82[ASN][1000 genomes]
rs11924469	0.84[ASN][1000 genomes]
rs11925631	0.84[ASN][1000 genomes]
rs11927179	0.84[ASN][1000 genomes]
rs17043760	0.82[ASN][1000 genomes]
rs1873265	0.84[EUR][1000 genomes]
rs6549143	0.85[JPT][hapmap]
rs7642273	0.84[ASN][1000 genomes]
rs9836496	0.85[ASN][1000 genomes]
rs9849884	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834722	chr3:68775036-68974120	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68807800-68811000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:68808000-68809200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:68808000-68809200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:68808000-68810800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:68808200-68811200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:68808400-68810200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:68808400-68813200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:68808600-68809800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:68808800-68809200	Enhancers	Stomach Smooth Muscle	stomach
10	chr3:68808800-68809800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:68808800-68810200	Enhancers	Fetal Brain Male	brain
12	chr3:68808800-68813200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:68809000-68811000	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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