Variant report

Variant	rs9841219
Chromosome Location	chr3:143379403-143379404
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13061355	1.00[ASW][hapmap]
rs13076949	1.00[ASW][hapmap]
rs1525858	1.00[ASW][hapmap]
rs16853857	1.00[ASW][hapmap]
rs17640925	1.00[ASW][hapmap]
rs1880662	1.00[ASW][hapmap]
rs4839601	1.00[ASW][hapmap]
rs4839602	1.00[ASW][hapmap]
rs6784766	1.00[GIH][hapmap]
rs73868093	1.00[AFR][1000 genomes]
rs746055	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143367400-143390400	Weak transcription	Brain Substantia Nigra	brain
2	chr3:143370400-143390400	Weak transcription	Fetal Lung	lung
3	chr3:143370800-143420800	Weak transcription	Primary T cells from cord blood	blood
4	chr3:143371200-143383000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr3:143374200-143382800	Weak transcription	Esophagus	oesophagus
6	chr3:143379000-143379600	ZNF genes & repeats	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links