The 2.0 version of rSNPBase

Variant report

Variant rs9841604
Chromosome Location chr3:69796907-69796908
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:69790200-69797400 Weak transcription Rectal Mucosa Donor 31 rectum
2 chr3:69790600-69802200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr3:69790800-69797400 Weak transcription Brain Anterior Caudate brain
4 chr3:69791000-69798200 Enhancers Fetal Thymus thymus
5 chr3:69792000-69797400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr3:69792200-69798000 Enhancers Adipose Nuclei Adipose
7 chr3:69792800-69798400 Enhancers Thymus Thymus
8 chr3:69793200-69798600 Enhancers Primary monocytes fromperipheralblood blood
9 chr3:69794200-69801200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
10 chr3:69794400-69799000 Enhancers NHDF-Ad bronchial
11 chr3:69794400-69799600 Enhancers NHLF lung
12 chr3:69794400-69800400 Enhancers Fetal Heart heart
13 chr3:69794600-69798200 Enhancers Brain Hippocampus Middle brain
14 chr3:69794800-69798000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
15 chr3:69795000-69797400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
16 chr3:69795000-69801600 Enhancers Colon Smooth Muscle Colon
17 chr3:69795000-69802000 Weak transcription Lung lung
18 chr3:69795000-69802200 Weak transcription Esophagus oesophagus
19 chr3:69795000-69810600 Weak transcription Pancreas Pancrea
20 chr3:69795200-69797000 Enhancers Fetal Stomach stomach
21 chr3:69795200-69798000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
22 chr3:69795200-69798600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr3:69795400-69798400 Weak transcription Fetal Lung lung
24 chr3:69795600-69799400 Enhancers Skeletal Muscle Male skeletal muscle
25 chr3:69795600-69801200 Enhancers Psoas Muscle Psoas
26 chr3:69795800-69801000 Enhancers Duodenum Smooth Muscle Duodenum
27 chr3:69796000-69797200 Enhancers Right Ventricle heart
28 chr3:69796000-69798000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
29 chr3:69796000-69798000 Enhancers Left Ventricle heart
30 chr3:69796200-69801200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr3:69796200-69802200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr3:69796400-69797600 Weak transcription K562 blood
33 chr3:69796400-69798000 Enhancers Muscle Satellite Cultured Cells --
34 chr3:69796400-69798000 Enhancers Osteobl bone
35 chr3:69796400-69798400 Weak transcription Fetal Muscle Leg muscle
36 chr3:69796400-69798600 Enhancers Primary hematopoietic stem cells short term culture blood
37 chr3:69796400-69798600 Enhancers Ovary ovary
38 chr3:69796400-69799800 Weak transcription Duodenum Mucosa Duodenum
39 chr3:69796600-69797000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
40 chr3:69796600-69797000 Enhancers Rectal Smooth Muscle rectum
41 chr3:69796600-69797600 Enhancers Skeletal Muscle Female skeletal muscle
42 chr3:69796600-69797600 Weak transcription Small Intestine intestine
43 chr3:69796600-69797800 Weak transcription Aorta Aorta
44 chr3:69796600-69798000 Enhancers HSMMtube muscle
45 chr3:69796600-69798200 Enhancers Primary T cells from cord blood blood
46 chr3:69796600-69798400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
47 chr3:69796600-69798800 Weak transcription Colonic Mucosa Colon
48 chr3:69796800-69797200 Weak transcription Right Atrium heart
49 chr3:69796800-69797200 Flanking Active TSS Stomach Smooth Muscle stomach
50 chr3:69796800-69797800 Weak transcription Brain Cingulate Gyrus brain

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Last update: Aug 31, 2015