Variant report

Variant	rs9841678
Chromosome Location	chr3:99837976-99837977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:99835537..99838051-chr3:99853432..99855517,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12330859	0.83[AFR][1000 genomes]
rs13326499	1.00[AFR][1000 genomes]
rs16841897	1.00[AFR][1000 genomes]
rs16841922	0.83[AFR][1000 genomes]
rs9820656	1.00[AFR][1000 genomes]
rs9826443	1.00[AFR][1000 genomes]
rs9830284	1.00[AFR][1000 genomes]
rs9837440	1.00[AFR][1000 genomes]
rs9841296	1.00[AFR][1000 genomes]
rs9843812	1.00[AFR][1000 genomes]
rs9860687	1.00[AFR][1000 genomes]
rs9861168	0.83[AFR][1000 genomes]
rs9870654	0.83[AFR][1000 genomes]
rs9871820	0.83[AFR][1000 genomes]
rs9883757	1.00[AFR][1000 genomes]
rs9990322	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv869848	chr3:99652246-99904276	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv932634	chr3:99660690-99888854	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1010579	chr3:99660754-99901817	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1008483	chr3:99660754-99903769	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1010897	chr3:99660754-99904783	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1001529	chr3:99661758-99892654	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
9	nsv536665	chr3:99661758-99892654	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
10	nsv591148	chr3:99774720-99905803	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99795800-99866600	Weak transcription	Primary T cells from cord blood	blood
2	chr3:99825200-99840600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:99825200-99844000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:99825200-99844200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:99825600-99841000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:99826200-99838200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:99826600-99862600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:99827400-99839000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:99829200-99841000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:99830000-99841200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:99831400-99841400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:99833200-99839600	Weak transcription	Gastric	stomach
13	chr3:99833400-99838200	Weak transcription	Esophagus	oesophagus
14	chr3:99833800-99838200	Weak transcription	Left Ventricle	heart
15	chr3:99833800-99838200	Weak transcription	Psoas Muscle	Psoas
16	chr3:99833800-99839000	Weak transcription	Right Ventricle	heart
17	chr3:99833800-99840800	Weak transcription	Aorta	Aorta
18	chr3:99835000-99838000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:99837400-99839800	Enhancers	Ovary	ovary
20	chr3:99837600-99838000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr3:99837600-99839600	Enhancers	HSMMtube	muscle

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