Variant report

Variant	rs9841726
Chromosome Location	chr3:53515794-53515795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12629138	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs2884712	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs312480	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[LWK][hapmap];0.94[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs312485	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4026181	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs658071	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7630080	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9841726	TKT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53511600-53516800	Enhancers	Fetal Intestine Large	intestine
2	chr3:53511600-53516800	Enhancers	Fetal Intestine Small	intestine
3	chr3:53513400-53518800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:53513600-53516000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:53513600-53516400	Enhancers	HepG2	liver
6	chr3:53513600-53516600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:53513800-53517400	Weak transcription	Fetal Lung	lung
8	chr3:53513800-53518200	Weak transcription	A549	lung
9	chr3:53513800-53527800	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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