Variant report

Variant	rs9841885
Chromosome Location	chr3:111930134-111930135
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11926389	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12489470	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12489616	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12636943	0.93[AMR][1000 genomes]
rs13064242	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs13098660	0.81[AMR][1000 genomes]
rs1388858	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1388859	0.93[AMR][1000 genomes]
rs17505536	0.89[AMR][1000 genomes]
rs1873712	0.82[AMR][1000 genomes]
rs1907763	0.86[AMR][1000 genomes]
rs1907764	0.93[AMR][1000 genomes]
rs2895391	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4234409	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4234410	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4234411	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4280608	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4321508	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4347976	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4373039	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs4401339	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4422273	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4434123	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4498008	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4507228	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4538347	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4564946	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4638935	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4682087	0.92[AMR][1000 genomes]
rs4682092	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4682367	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4682373	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs55714509	0.85[AMR][1000 genomes]
rs56042414	0.82[AMR][1000 genomes]
rs62277480	0.85[AMR][1000 genomes]
rs6438037	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6438038	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6770357	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs6772480	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6781207	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs6781215	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs6781844	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6789875	0.93[AMR][1000 genomes]
rs6797177	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6801795	0.93[AMR][1000 genomes]
rs6804836	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6805397	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6805505	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs6805887	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs7431999	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7432037	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7615460	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7621219	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7625249	0.92[AMR][1000 genomes]
rs7631223	0.93[AMR][1000 genomes]
rs7637682	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9288942	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9810170	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9813882	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9819540	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9838986	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9871492	0.92[AMR][1000 genomes]
rs9871532	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9877734	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591291	chr3:111914624-111962851	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv591292	chr3:111914624-111993915	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3437811	chr3:111929311-111950399	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111930000-111930400	Weak transcription	Aorta	Aorta

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