Variant report

Variant	rs9842222
Chromosome Location	chr3:146368187-146368188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10935636	0.83[ASN][1000 genomes]
rs11717209	0.85[ASN][1000 genomes]
rs11916605	0.85[ASN][1000 genomes]
rs11924592	0.85[ASN][1000 genomes]
rs1858327	0.85[ASN][1000 genomes]
rs2868443	0.84[ASN][1000 genomes]
rs57946797	0.84[ASN][1000 genomes]
rs59073001	0.85[ASN][1000 genomes]
rs6807202	0.85[ASN][1000 genomes]
rs73159158	0.85[ASN][1000 genomes]
rs9847565	0.86[ASN][1000 genomes]
rs9860683	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516386	chr3:146366513-146758405	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv4047	chr3:146368154-146401858	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146361400-146370800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:146361400-146371800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:146362600-146372800	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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