Variant report

Variant	rs984238
Chromosome Location	chr7:11451436-11451437
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10224667	0.88[ASN][1000 genomes]
rs10233249	0.85[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10253716	0.91[EUR][1000 genomes]
rs10260759	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271517	1.00[ASN][1000 genomes]
rs1468243	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs1468247	0.91[EUR][1000 genomes]
rs28882219	0.81[ASN][1000 genomes]
rs4719274	1.00[ASN][1000 genomes]
rs4720979	1.00[CHB][hapmap]
rs4720980	0.88[CHB][hapmap]
rs4720981	1.00[ASN][1000 genomes]
rs4720985	0.91[EUR][1000 genomes]
rs4720986	0.91[EUR][1000 genomes]
rs73675998	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73675999	0.91[EUR][1000 genomes]
rs886365	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1024171	chr7:10810444-11559156	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv817291	chr7:10875417-11562683	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv523279	chr7:11198193-11473561	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv518180	chr7:11198193-11475819	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1015837	chr7:11208733-11475112	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv538732	chr7:11208733-11475112	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv830902	chr7:11336527-11523904	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv830903	chr7:11384957-11586376	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv1032865	chr7:11395480-11477467	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11431200-11461600	Weak transcription	A549	lung
2	chr7:11432200-11453200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:11433000-11453400	Weak transcription	Fetal Stomach	stomach
4	chr7:11435800-11453200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:11438600-11459800	Weak transcription	Fetal Brain Female	brain
6	chr7:11442800-11456600	Weak transcription	Brain Anterior Caudate	brain
7	chr7:11443400-11456800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:11444200-11459800	Weak transcription	Left Ventricle	heart
9	chr7:11444800-11453000	Weak transcription	Fetal Intestine Small	intestine
10	chr7:11445000-11454000	Weak transcription	Brain Substantia Nigra	brain
11	chr7:11446600-11464000	Weak transcription	Fetal Kidney	kidney
12	chr7:11447000-11452200	Weak transcription	Fetal Lung	lung
13	chr7:11447000-11464000	Weak transcription	Fetal Brain Male	brain
14	chr7:11447200-11452200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr7:11447200-11453400	Weak transcription	Adipose Nuclei	Adipose
16	chr7:11447200-11459800	Weak transcription	Ovary	ovary
17	chr7:11450600-11453600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:11451000-11460000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:11451200-11452200	Weak transcription	Liver	Liver
20	chr7:11451200-11453400	Weak transcription	Placenta	Placenta

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