Variant report

Variant	rs9842595
Chromosome Location	chr3:45922691-45922692
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:45920568..45923381-chr3:45930767..45933246,2	K562	blood:
2	chr3:45920568..45923830-chr3:45927927..45933246,5	K562	blood:
3	chr3:45922108..45924975-chr3:45933515..45935925,2	K562	blood:

Variant related genes	Relation type
ENSG00000173585	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28607988	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57319220	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823523	0.92[ASN][1000 genomes]
rs9855205	0.92[ASN][1000 genomes]
rs9881306	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45914800-45924000	Enhancers	Thymus	Thymus
2	chr3:45916600-45925200	Genic enhancers	Dnd41	blood
3	chr3:45918400-45926000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:45919000-45922800	Enhancers	GM12878-XiMat	blood
5	chr3:45920800-45924200	Enhancers	Primary T cells from cord blood	blood
6	chr3:45921000-45923200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr3:45921400-45923600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:45921600-45923200	Enhancers	Primary T cells fromperipheralblood	blood
9	chr3:45921600-45923400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:45922000-45922800	Enhancers	NHEK	skin
11	chr3:45922000-45923000	Enhancers	Left Ventricle	heart
12	chr3:45922000-45923000	Enhancers	Spleen	Spleen
13	chr3:45922000-45923400	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr3:45922000-45923400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr3:45922000-45923600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:45922000-45923600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr3:45922000-45923800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:45922000-45924000	Enhancers	Fetal Heart	heart
19	chr3:45922200-45923000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:45922200-45923000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:45922200-45923000	Enhancers	Right Ventricle	heart
22	chr3:45922200-45923200	Bivalent Enhancer	Osteobl	bone
23	chr3:45922200-45923400	Enhancers	Primary hematopoietic stem cells	blood
24	chr3:45922200-45923400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:45922200-45923400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:45922200-45923400	Enhancers	HMEC	breast
27	chr3:45922200-45923600	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr3:45922200-45923600	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr3:45922200-45923600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:45922400-45923000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr3:45922400-45924000	Genic enhancers	Fetal Thymus	thymus
32	chr3:45922600-45923000	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr3:45922600-45923000	Enhancers	Fetal Stomach	stomach
34	chr3:45922600-45923000	Flanking Active TSS	K562	blood
35	chr3:45922600-45923200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr3:45922600-45923400	Enhancers	Esophagus	oesophagus

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