Variant report

Variant	rs9843553
Chromosome Location	chr3:110598210-110598211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10212570	0.88[AFR][1000 genomes]
rs13319110	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16857659	1.00[AMR][1000 genomes]
rs7614643	1.00[AMR][1000 genomes]
rs7643478	1.00[AFR][1000 genomes]
rs9810748	1.00[AFR][1000 genomes]
rs9813411	0.81[AFR][1000 genomes]
rs9856324	1.00[AFR][1000 genomes]
rs9876416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9879574	1.00[AFR][1000 genomes]
rs9883819	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110594200-110607600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:110597000-110601200	Enhancers	Dnd41	blood
3	chr3:110597400-110600600	Enhancers	Liver	Liver
4	chr3:110598000-110598600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:110598000-110598600	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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