Variant report

Variant	rs9843907
Chromosome Location	chr3:60014037-60014038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11130746	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3845970	0.91[EUR][1000 genomes]
rs3845971	0.92[EUR][1000 genomes]
rs9816955	0.85[ASN][1000 genomes]
rs9817092	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9819370	0.84[EUR][1000 genomes]
rs9861525	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9868731	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9869016	0.94[ASN][1000 genomes]
rs9874888	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv590388	chr3:59957252-60018326	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv834707	chr3:60005679-60184046	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60003800-60021200	Weak transcription	Thymus	Thymus
2	chr3:60007000-60014600	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr3:60007400-60016400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr3:60008000-60014800	Enhancers	Dnd41	blood
5	chr3:60008600-60016400	Enhancers	Primary T cells from cord blood	blood
6	chr3:60008800-60017400	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr3:60013000-60014200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:60013400-60022600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr3:60013800-60014400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr3:60014000-60014200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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